To force a check on your next reboot (here for your root partition), simply:
touch /forcefsck
To manually do this, here is how to do it for the first partition on sda, when you are using ext4:
fsck.ext4 -fn /dev/sda1
- 
-fforces the check, even if everything seems okay. - 
-nis a "read only" check, where nothing is changed and every question is answered with "no". - 
When using dmcrypt, you probably want to check something like 
/dev/mapper/lvm-root. 
This does not work properly when doing this on mounted devices (i.e. while your system is up), even when using the -n switch.
Kudos to Kim.
Posted by Arne Hartherz to makandra dev (2012-05-07 12:35)